Library versions

Python packages

Python 3.12

Package	Latest version tested with the GitBook code
pandas	1.5.3
matplotlib	3.7.2
seaborn	0.11.2
scikit-learn	1.2.2
statsmodels	0.14.0
statsmodels	0.14.0

R libraries (in order of appearance in the GitBook):

R – v4.4.1

RStudio – v2024.04.2

Library	Latest version tested with the GitBook code
readxl	1.4.3
tidyverse	2.0.0
tidymodels	1.2.0
magrittr	2.0.3
tidyr	1.3.1
DataExplorer	0.8.3
VIM	6.2.2
randomForest	4.7-1.2
recipes	1.1.0
bestNormalize	1.9.1
dlookr	0.6.2
psych	2.3.6
summarytools	1.0.1
rstatix	0.7.2
skimr	2.1.5
dplyr	1.1.3
gtsummary	2.2.0
gt	1.0.0
ggpubr	0.6.0
tidyplots	0.2.1
ggplot2	3.5.1
ggimage	0.3.3
plotly	4.10.4
ggstatsplot	0.13.1
litteR	1.0.0
ggpmisc	0.6.1
ggcorrplot	0.1.4.1
corrplot	0.92
RColorBrewer	1.1-3
ggsci	3.2.0
wesanderson	0.3.7
viridis	0.6.5
reshape	0.8.9
reshape 2	1.4.4
colorBlindness	0.1.9
forcats	1.0.0
ggthemes	5.1.0
cowplot	1.1.3
GGally	2.2.1
PMCMRplus	1.9.12
coin	1.4-3
EnhancedVolcano	1.22.0
splitstackshape	1.4.8
mixOmics	6.28.0
factoextra	1.0.7
FactoMineR	2.11
ggrepel	0.9.6
Rtsne	0.17
scales	1.4.0
uwot	0.2.3
caret	7.0-1
pROC	1.18.5
plsmod	1.0.0
pls	2.8-5
rsample	1.3.0
vip	0.4.1
ropls	1.36.0
ggtree	3.12.0
ComplexHeatmap	2.20.0
circlize	0.4.16
shiny	1.10.0
InteractiveComplexHeatmap	1.14.0
e1071	1.7-16